Category Archives: science life

Threads

I’ve been using Twitter (@awojdyla) more frequently over the last 3 years, finding a lot value in this tool which allows to address a worldwide audience and reach out to people in a very effective way.

Straight goals

Twitter is a very strange medium, in that it can be extremely helpful to reach out to people (the six degrees of separation collapse to one, basically), but whose rules and purpose are hard to understand.

Here’s a few remarks on my experience, and some resources if you’re interested in engaging the tweet game!

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Open access – redux

Wow the levy is about to break on Open Access!

I’ve written a few times on Open Access (here, and here), and things have been changing at an incredible pace.

A quick explanation about the topic: scientists share their research by publishing into very specialized journals. These journals then either charge a fee (>$10) for any reader to read a specific article, or as is more often the case, collect a subscription for an institution so that all of the people who work for this institution get complete access to a journal or a set of journal. The problem here is that the research submitted by the authors is often funded by public entities, which do not have the right to read the publications of other group freely (open access.) And the subscription fees have skyrocketed (e.g. in the order of $10 million for UC Berkeley.)

But now, large entities are rebelling.

The first salvo came from funding agencies, which require the papers to be made freely available, either by sharing the pre-prints (e.g. on arxiv) or by publishing in an Open Access journal (journals where the authors pay (usually $1000!) to get published, and where anyone can read.)

Then came Germany, which reached an impass with the academic publisher Elsevier (one of the leading actors, together with Springer and Wiley) and decided not to pay for the racket (projekt DEAL). The issue has not been resolved yet and German researchers still do not have access to publications such as Cell (they can however directly contact the authors of the papers to get the papers — which actually sound like a good way to start off collaborations!)

Next is the University of California (the whole UC system, with UC Berkeley, Los Angeles, … including Lawrance Berkeley National Lab and Los Alamos), who decided not reneged a deal with Elsevier. That’s a lot of people, for the most important public university system in the world. The impact can be quite dramatic…

And soon will be the turn of Europe as a whole, with Plan S, starting next year…

I can’t wait to see the science literature being unshackled!

Still, don’t expect much changes in the conduct of science… “Authors do not publish to get read, they publish to get reviewed.”

 

Autopilot

Lead by lidar

At the moment (April 2019), the economy is in a weird quantum superposition of doom (yield curve inversion) and exaltation, with Lyft recently joining the public markets (always loved the irony of the term…)

I’ve been talking to a few people involved in driverless cars and AI lately, asking them…. when? They usually tell me soon, the problem they have is that the main drawback with learned neural networks is that they are almost impossible to debug. You can try to get insight on how they work (see the fascinating Activation Atlas), but it’s really difficult to rewire them.

And it’s actually pretty easy to hack them — you can easily do some random addition to find noise that will activates the whole network. In the real world, you can put stickers at just the right location and… make every other car crash. Pretty scary…

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Kolmogorov Access

Back in undergrad, I remember being fascinated by the notion of Kolmogorov complexity in computer science.

Put simply, the Kolmogorov complexity is the minimal length (number of lines) of the code needed to generate a signal, would it be a mathematical sequence (such as one listed in the OEIS) or an image, irrespective to the size needed to store it. It bears deep relations with the notion of entropy (a great book on the topic is Information Theory, Inference, and Learning Algorithms by the late David MacKay.)

For example, a series of eight billion ones in a row would require 1GB of memory, but can be written in a few lines of code:

for i in 1:1e9; print 1; end

(To some extent, this is why computer science is often problematic, since one of the goal of a good code is sometimes to reduce its Kolmogorov complexity, but the final code does not show all the lines that have been erased to get there…)

In the field of arts, culture and science, this description seems naive: can you really generate a book based on a script, or has it infinite entropy?

Science is organized knowledge. Wisdom is organized life.
– Immanuel Kant

In the age of the Internet, can we do better?

update 6/10/2019: I’ve seen recently on Twitter the embodiment of these ideas, see Nicole R.‘s thread. Way to go!

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Savant

In other news I was recently promoted to a staff position at Lawrence Berkeley National Lab!

It’s still tenure track (hopefully the position will be fully secured in two years from now) , but I’m getting closer to my childhood dream: to become a savant.

I am extremely lucky to be there, working on a major US scientific infrastructure project (ALS-U), in a fantastic lab with my window literally overlooking the Silicon Valley.

The golden gate

Right now, I’m mostly doing beamline design and simulation, with some wavefront sensing and adaptive optics. Lots of very challenging topics (we have to deal with a laser-like beam hundred times smaller than a hair blasting kilowatts of light), and I’m learning a lot along the way. Amazing times!

Vision+Light

Somehow my art piece has been accepted! A delightful play on the wavelike behavior of light, and the particle0like behavior of silicon atoms, in a tribute to Malevich. Instant Classic!

Incoherent on coherent

You can now see it at the Vision+Light exhibition on Berkeley Campus, from February 20th to March 14th, 2019

XFELs as non-kinetic weapons

A family tale goes that my grandfather, who was working in an ammunition factory near Chatellerault which became under German control during WWII. As he was ordered by the German command to paint the factory, he chose to buy buckets of red and white, and paint the factory with a beautiful bull’s eye ornament, what didn’t escape the British RAF notice. They were able destroyed the critical facility that fell into the hands of the invader…

I’m not sure how much of this story is true. I do not have reason to doubt it, however!

As we celebrate the hundredth anniversary of the first world war, I can only think of the many ways, under the promise of surgical interventions, making war has become worse. But maybe — maybe — if we can keep the enemy from dropping bombs on us, we can be safer.
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dlsr.org

Hi there!

Preparing for the new generation of synchrotron light source, I’ve just started dlsr.org (Diffraction-Limited Storage Ring), and created relevant articles on Wikipedia (entries for (Diffraction-Limited Storage Ring  and Beijing’s High Energy Photon Source.)

The goal is to have platform to share knowledge and ideas in a format more flexible than conferences and papers (it takes inspiration from Rüdiger Paschotta’s momentous Encyclopedia of Laser Physics and Technology, though it does not aim to be as comprehensive!)

Let me know if you’re interested in contributing!

How to retrieve and handle x-ray data

A bit wonky, but here’s where you can get x-ray data, how to use it in python, and some common conversion.

Here are two important database to know:

CXRO database

NIST database

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SPIE DCS 2018: CCSI – Computational Imaging

This year I’m chairing the Computational Imaging session at the SPIE Defense + Commercial Sensing, in Orlando, Fla., April 16-19, 2018, together with Aamod Shanker. We have invited a lot of amazing speakers and we are organizing a panel discussion on the trends in computational imaging.

Here’s the program:

SESSION 6 TUE APRIL 17, 2018 – 11:10 AM TO 12:00 PM
Computational Imaging I
[10656-22] “Ultra-miniature…”David G. Stork, Rambus Inc. (USA)
[10656-36] “Computed axial lithography: volumetric 3D printing of arbitrary geometries” Indrasen Bhattacharya
Lunch/Exhibition Break Tue 12:00 pm to 1:50 pm

SESSION 7 TUE APRIL 17, 2018 – 1:50 PM TO 3:30 PM
Computational Imaging II
[10656-24] “Terahertz radar for imaging…”Goutam Chattopadhyay
[10656-23] “Computational imaging…” Lei Tian
[10656-26] “Achieving fast high-resolution 3D imaging” Dilworth Y. Parkinson
[10656-27] “Linear scattering theory in phase space” Aamod Shanker

PANEL DISCUSSION TUE APRIL 17, 2018 -4:00 PM TO 6:00 PM

TUESDAY POSTER SESSION TUE 6:00 PM TO 8:00 PM

SESSION 8 WED APRIL 18, 2018 – 8:00 AM TO 10:05 AM
Computational Imaging III
[10656-28] “High resolution 3D imaging…” Michal Odstrcil
[10656-29] “A gigapixel camera array…” Roarke Horstmeyer
[10656-30] “EUV photolithography mask inspection using Fourier ptychography” Antoine Wojdyla,
[10656-31] “New systems for computational x-ray phase imaging…” Jonathan C. Petruccelli,
[10656-68] “Low dose x-ray imaging by photon counting detector”, Toru Aoki

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